Package: imuGAP
Title: Immunity: Geographic and Age-Based Projection
Version: 0.3.0
Authors@R: 
    c(person("Carl", "Pearson", email = "carl.ab.pearson@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0003-0701-7860")),
      person("Claire Perrin", "Smith", role = "aut",
           comment = c(ORCID = "0000-0003-1069-9460")),
      person("Kelly", "Zhen", email = "zhen717605@gmail.com", role = "ctb"),
      person("Weston", "Voglesonger", email = "westonvogle@gmail.com", role = "ctb"),
      person("Joshua", "Chen", email = "joshuazchen1@gmail.com", role = "ctb"),
      person("Minjae", "Kung", email = "minjaekung@gmail.com", role = "ctb"))
Description: Fits Bayesian hierarchical models of vaccine coverage by
        location, birth cohort, and age. Observations of vaccination
        status (which may span cohorts, ages, and doses) are used to
        fit a latent survival-style process model that decomposes
        coverage into a lifetime propensity to vaccinate and a
        time-varying force of vaccination. Hierarchical spatial
        structure (e.g., state, county, school) supports partial
        pooling via random effects. Models are implemented in 'Stan'
        and fit via 'rstan'. Provides helpers to validate user-supplied
        input data, and to predict coverage from fitted models.
License: MIT + file LICENSE
Encoding: UTF-8
Language: en-US
Roxygen: list(markdown = TRUE, roclets = c("collate", "namespace",
        "rd", "roxyglobals::global_roclet"))
RoxygenNote: 7.3.3
Biarch: true
Depends: R (>= 4.1.0)
Imports: data.table, flexstanr (>= 0.2.0), methods, Rcpp (>= 1.1.2),
        RcppParallel (>= 5.1.11.2), rstan (>= 2.32), rstantools (>=
        2.6.0)
LinkingTo: BH (>= 1.90), Rcpp (>= 1.1.2), RcppEigen (>= 0.3.4),
        RcppParallel (>= 5.1.11), rstan (>= 2.32), StanHeaders (>=
        2.32)
SystemRequirements: GNU make
Config/Needs/check: stan-dev/cmdstanr
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), roxygen2, roxyglobals,
        lintr, spelling, bayesplot, ggplot2, withr, pkgload, thematic,
        usethis, loo (>= 2.6.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
URL: https://accidda.github.io/imuGAP/,
        https://github.com/ACCIDDA/imuGAP
BugReports: https://github.com/ACCIDDA/imuGAP/issues
LazyData: true
LazyDataCompression: xz
Config/roxyglobals/filename: globals.R
Config/roxyglobals/unique: FALSE
Config/pak/sysreqs: cmake make
Repository: https://accidda.r-universe.dev
Date/Publication: 2026-10-05 22:48:58 UTC
RemoteUrl: https://github.com/accidda/imugap
RemoteRef: HEAD
RemoteSha: e1a88fdde2bf8ac706fe52d849a6dac9ab5579f1
NeedsCompilation: yes
Packaged: 2026-10-13 12:59:50 UTC; root
Author: Carl Pearson [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-0701-7860>),
  Claire Perrin Smith [aut] (ORCID:
    <https://orcid.org/0000-0003-1069-9460>),
  Kelly Zhen [ctb],
  Weston Voglesonger [ctb],
  Joshua Chen [ctb],
  Minjae Kung [ctb]
Maintainer: Carl Pearson <carl.ab.pearson@gmail.com>