Package: imuGAP 0.1.0

Carl Pearson

imuGAP: Immunity: Geographic and Age-Based Projection

Fits Bayesian hierarchical models of vaccine coverage by location, birth cohort, and age. Observations of vaccination status (which may span cohorts, ages, and doses) are used to fit a latent survival-style process model that decomposes coverage into a lifetime propensity to vaccinate and a time-varying force of vaccination. Hierarchical spatial structure (e.g., state, county, school) supports partial pooling via random effects. Models are implemented in 'Stan' and fit via 'rstan'. Provides helpers to validate user-supplied input data, and to predict coverage from fitted models.

Authors:Carl Pearson [aut, cre], Claire Perrin Smith [aut], Kelly Zhen [ctb], Weston Voglesonger [ctb], Joshua Chen [ctb], Minjae Kung [ctb]

imuGAP_0.1.0.tar.gz
imuGAP_0.1.0.zip(r-4.7)imuGAP_0.1.0.zip(r-4.6)imuGAP_0.1.0.zip(r-4.5)
imuGAP_0.1.0.tgz(r-4.6-x86_64)imuGAP_0.1.0.tgz(r-4.6-arm64)imuGAP_0.1.0.tgz(r-4.5-x86_64)imuGAP_0.1.0.tgz(r-4.5-arm64)
imuGAP_0.1.0.tar.gz(r-4.7-arm64)imuGAP_0.1.0.tar.gz(r-4.7-x86_64)imuGAP_0.1.0.tar.gz(r-4.6-arm64)imuGAP_0.1.0.tar.gz(r-4.6-x86_64)
|manual.html✨
card.svg |card.png
imuGAP/json (API)
NEWS

# Install 'imuGAP' in R:
install.packages('imuGAP', repos = c('https://accidda.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/accidda/imugap/issues

Pkgdown/docs site:https://accidda.github.io

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

cpp

5.62 score 2 stars 6 scripts 8 exports 49 dependencies

Last updated from:38f557ef65. Checks:11 WARNING, 1 ERROR, 1 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64WARNING270
linux-devel-x86_64WARNING262
source / vignettesERROR360
linux-release-arm64WARNING288
linux-release-x86_64WARNING288
macos-release-arm64WARNING191
macos-release-x86_64WARNING730
macos-oldrel-arm64WARNING225
macos-oldrel-x86_64WARNING327
windows-develWARNING375
windows-releaseWARNING313
windows-oldrelWARNING338
wasm-releaseFAIL154

Exports:canonicalize_locationscanonicalize_observationscanonicalize_populationscreate_targetextract_imugapimugap_optionssamplingstan_options

Dependencies:abindbackportsBHcallrcheckmateclicpp11data.tabledescdistributionalfarvergenericsggplot2gluegridExtragtableinlineisobandlabelinglifecycleloomagrittrmatrixStatsnumDerivotelpillarpkgbuildpkgconfigposteriorprocessxpsQuickJSRR6RColorBrewerRcppRcppEigenRcppParallelrlangrstanrstantoolsS7scalesStanHeaderstensorAtibbleutf8vctrsviridisLitewithr

imuGAP, Immunity: Geographic & Age-based Projection

Rendered fromimuGAP.Rmdusingknitr::rmarkdownon Jun 23 2026.

Last update: 2026-06-16
Started: 2025-11-30