Package: imuGAP 0.3.0

Carl Pearson

imuGAP: Immunity: Geographic and Age-Based Projection

Fits Bayesian hierarchical models of vaccine coverage by location, birth cohort, and age. Observations of vaccination status (which may span cohorts, ages, and doses) are used to fit a latent survival-style process model that decomposes coverage into a lifetime propensity to vaccinate and a time-varying force of vaccination. Hierarchical spatial structure (e.g., state, county, school) supports partial pooling via random effects. Models are implemented in 'Stan' and fit via 'rstan'. Provides helpers to validate user-supplied input data, and to predict coverage from fitted models.

Authors:Carl Pearson [aut, cre], Claire Perrin Smith [aut], Kelly Zhen [ctb], Weston Voglesonger [ctb], Joshua Chen [ctb], Minjae Kung [ctb]

imuGAP_0.3.0.tar.gz
imuGAP_0.3.0.zip(r-4.7-x86_64)imuGAP_0.3.0.zip(r-4.7-arm64)imuGAP_0.3.0.zip(r-4.6-x86_64)imuGAP_0.3.0.zip(r-4.6-arm64)imuGAP_0.3.0.zip(r-4.5-x86_64)
imuGAP_0.3.0.tgz(r-4.6-x86_64)imuGAP_0.3.0.tgz(r-4.6-arm64)imuGAP_0.3.0.tgz(r-4.5-x86_64)imuGAP_0.3.0.tgz(r-4.5-arm64)
imuGAP_0.3.0.tar.gz(r-4.7-arm64)imuGAP_0.3.0.tar.gz(r-4.7-x86_64)imuGAP_0.3.0.tar.gz(r-4.6-arm64)imuGAP_0.3.0.tar.gz(r-4.6-x86_64)
imuGAP_0.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
imuGAP/json (API)

# Install 'imuGAP' in R:
install.packages('imuGAP', repos = c('https://accidda.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/accidda/imugap/issues

Pkgdown/docs site:https://accidda.github.io

Uses libs:
  • onetbb– Parallelism library for C++
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

onetbbcpp

4.95 score 2 stars 12 scripts 355 downloads 10 exports 51 dependencies

Last updated from:e1a88fdde2. Checks:14 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64ERROR764
linux-devel-x86_64ERROR817
source / vignettesERROR527
linux-release-arm64ERROR761
linux-release-x86_64ERROR905
macos-release-arm64ERROR1094
macos-release-x86_64ERROR1118
macos-oldrel-arm64ERROR825
macos-oldrel-x86_64ERROR1412
windows-devel-arm64ERROR524
windows-devel-x86_64ERROR425
windows-release-arm64ERROR498
windows-release-x86_64ERROR415
windows-oldrel-x86_64ERROR417
wasm-releaseOK270

Exports:canonicalize_locationscanonicalize_observationscanonicalize_populationscanonicalize_targetcreate_observation_populationscreate_targetextract_imugapimugap_optionssamplingstan_options

Dependencies:abindbackportsBHcallrcheckmateclicpp11data.tabledescdistributionalfarverflexstanrgenericsggplot2gluegridExtragtableinlineisobandlabelinglifecycleloomagrittrmatrixStatsnumDerivotelparallellypillarpkgbuildpkgconfigposteriorprocessxpsQuickJSRR6RColorBrewerRcppRcppEigenRcppParallelrlangrstanrstantoolsS7scalesStanHeaderstensorAtibbleutf8vctrsviridisLitewithr